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PDBsum entry 4euw

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protein dna_rna links
Transcription/DNA PDB id
4euw

 

 

 

 

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Contents
Protein chain
72 a.a.
DNA/RNA
Waters ×7
PDB id:
4euw
Name: Transcription/DNA
Title: Crystal structure of a hmg domain of transcription factor sox-9 bound to DNA (sox-9/DNA) from homo sapiens at 2.77 a resolution
Structure: Transcription factor sox-9. Chain: a. Fragment: hmg box containing residues 98-181. Engineered: yes. DNA (5'-d( Cp Tp Cp Tp Tp Tp Gp Ap Gp Ap Ap G)-3'). Chain: b. Engineered: yes. DNA (5'-d( Cp Tp Tp Cp Tp Cp Ap Ap Ap Gp Ap G)-3'). Chain: c.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: sgt82680, sox9. Expressed in: escherichia coli. Expression_system_taxid: 469008. Synthetic: yes. Other_details: sequence matching the sox-9 binding site from the anti-mullerian hormone (amh) promoter, top strand.
Resolution:
2.77Å     R-factor:   0.248     R-free:   0.278
Authors: Joint Center For Structural Genomics (Jcsg),Partnership For Stem Cell Biology (Stemcell)
Key ref: Joint center for structural genomics (jcsg) and partnership for stem cell biology Crystal structure of a hmg domain of transcription fa sox-9 bound to DNA (sox-9/DNA) from homo sapiens at 2 resolution. To be published, .
Date:
25-Apr-12     Release date:   13-Jun-12    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P48436  (SOX9_HUMAN) -  Transcription factor SOX-9 from Homo sapiens
Seq:
Struc:
509 a.a.
72 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

DNA/RNA chains
  C-T-C-T-T-T-G-A-G-A-A-G 12 bases
  C-T-T-C-T-C-A-A-A-G-A-G 12 bases

 

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