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PDBsum entry 4dv4

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4dv4 calculated with MOLE 2.0 PDB id
4dv4
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.44 18.6 0.63 0.03 8.7 73 3 1 0 5 0 1 0  
2 1.50 1.52 19.3 -0.85 -0.15 16.9 65 1 1 0 2 0 1 0  C 188 A
3 1.37 1.37 22.6 0.22 -0.08 9.5 66 1 1 0 5 0 1 0  C 188 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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