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PDBsum entry 4dto

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 4dto calculated with MOLE 2.0 PDB id
4dto
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.89 2.30 32.7 -0.75 -0.21 9.6 73 2 3 1 2 3 2 0  
2 1.83 2.10 37.5 -1.54 -0.25 27.4 82 5 4 1 5 1 0 0  DCP 1001 A CA 1005 A DT 112 P DT 113 P DA 114 P D
A 115 P DA 3 T
3 1.79 2.07 38.4 -2.07 -0.33 29.6 79 8 4 2 5 1 0 0  DCP 1001 A CA 1005 A
4 1.54 1.57 55.7 -1.63 -0.66 18.3 86 5 2 4 0 1 1 0  DC 104 P DG 105 P DT 109 P DG 110 P DC 10 T DA 11
T DG 12 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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