spacer
spacer

PDBsum entry 4dtb

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4dtb calculated with MOLE 2.0 PDB id
4dtb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.20 2.53 41.5 -1.44 -0.04 22.3 76 2 8 4 1 4 0 0  
2 2.19 2.30 50.6 -1.69 -0.08 22.6 74 4 7 3 4 4 1 0  
3 2.13 2.55 75.5 -1.72 -0.18 22.4 75 4 9 5 3 5 1 0  GMP 401 B
4 2.16 2.29 78.5 -1.59 -0.14 20.2 74 3 8 4 7 5 2 0  GMP 401 B
5 1.89 2.01 80.7 -2.39 -0.21 19.9 78 6 10 9 2 6 0 0  
6 1.38 1.69 94.4 -1.93 -0.13 18.5 76 6 10 8 6 6 1 0  
7 1.17 2.71 96.9 -1.62 -0.36 19.8 81 8 2 5 5 1 2 0  
8 1.90 2.01 99.3 -2.10 -0.16 17.5 78 4 14 11 3 8 0 0  
9 1.24 1.22 111.7 -1.96 -0.45 18.0 83 10 3 11 3 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer