PDBsum entry 4dpd Go to PDB code:  Tunnel analysis for: 4dpd calculated with MOLE 2.0 PDB id 4dpd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.27 32.1 0.98 0.42 5.2 76 1 1 1 7 5 0 1  DHF 701 A 2 1.27 1.35 32.3 0.48 0.05 3.9 80 0 2 1 5 5 0 0  DHF 701 A NAP 702 A 3 1.27 1.36 33.7 0.57 0.30 5.7 75 1 1 0 6 4 1 1  DHF 701 A 4 1.27 1.28 51.9 0.38 -0.02 4.8 83 2 1 2 6 5 0 0  DHF 701 A NAP 702 A 5 1.26 1.25 32.6 -1.63 -0.52 17.5 86 5 2 3 4 2 0 0   6 1.25 1.26 40.1 -1.47 -0.32 17.7 83 4 2 5 7 3 0 1  UMP 703 A 7 1.45 1.46 28.3 0.10 0.16 4.5 76 0 2 2 7 2 1 1  UMP 701 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.