PDBsum entry 4dp3 Go to PDB code:  Tunnel analysis for: 4dp3 calculated with MOLE 2.0 PDB id 4dp3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 2.32 35.5 -0.70 0.12 11.9 78 1 3 3 5 5 0 1   2 1.13 2.23 36.6 0.05 0.39 9.6 75 3 1 2 5 6 0 0   3 1.16 1.35 28.6 0.90 0.34 4.3 79 0 1 1 6 4 1 0  MMV 701 B NDP 702 B 4 1.17 1.37 29.0 0.49 -0.07 3.7 78 0 1 2 5 5 0 0  MMV 701 B NDP 702 B 5 1.25 1.29 29.9 0.35 0.04 3.9 80 0 1 2 6 5 0 0  MMV 701 A NDP 702 A 6 1.25 1.28 33.1 0.69 0.39 5.8 73 1 1 1 5 5 1 1  MMV 701 A NDP 702 A 7 1.25 1.45 22.7 -1.66 -0.58 16.5 89 3 2 3 1 1 0 0   8 1.26 1.43 43.1 -1.63 -0.39 18.4 80 5 3 4 4 2 0 1  PO4 703 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.