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PDBsum entry 4dfp

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Pore analysis for: 4dfp calculated with MOLE 2.0 PDB id
4dfp
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.77 1.88 29.6 -1.99 -0.70 19.3 91 4 2 2 0 0 0 0  MG 910 A DC 106 B DG 107 B DG 108 B DG 211 C DT
212 C DG 213 C DG 214 C
2 1.24 1.32 49.8 -1.36 -0.61 17.7 85 6 4 2 3 0 0 0  DA 105 B DC 109 B DG 110 B FMT 201 B MG 202 B DA
201 C DA 202 C DG 205 C DG 206 C DC 207 C DG 208
C DC 210 C DG 211 C DT 212 C FMT 301 C EDO 302 C
3 2.24 4.14 52.0 -2.66 -0.55 30.7 80 7 3 0 1 0 1 0  0L7 908 A DA 105 B DC 109 B DG 110 B DC 111 B DOC
112 B FMT 201 B MG 202 B DA 202 C DG 205 C DG 206
C DC 207 C DG 208 C FMT 301 C EDO 302 C
4 1.21 1.33 58.6 -1.52 -0.57 21.9 81 7 4 0 3 0 0 0  MG 910 A DA 105 B DC 106 B DG 107 B DG 108 B DC
109 B DG 110 B FMT 201 B MG 202 B DA 201 C DA 202
C DG 205 C DG 206 C DC 207 C DG 208 C DC 210 C DG
211 C DT 212 C DG 213 C DG 214 C FMT 301 C EDO
302 C
5 1.23 1.32 61.6 -2.17 -0.56 25.1 84 8 5 2 3 0 1 0  0L7 908 A DC 109 B DG 110 B DC 111 B DOC 112 B
FMT 201 B DG 205 C DC 210 C DG 211 C DT 212 C
6 1.23 1.32 70.3 -2.21 -0.53 27.8 81 9 5 0 3 0 1 0  0L7 908 A MG 910 A DC 106 B DG 107 B DG 108 B DC
109 B DG 110 B DC 111 B DOC 112 B FMT 201 B DG
205 C DC 210 C DG 211 C DT 212 C DG 213 C DG 214 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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