 |
PDBsum entry 4dbs
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4dbs calculated with MOLE 2.0
|
PDB id
|
|
|
|
4dbs
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
1 pore,
coloured by radius |
 |
6 pores,
coloured by radius
|
6 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.93 |
3.45 |
28.3 |
-0.66 |
0.31 |
10.9 |
69 |
 |
2 |
1 |
4 |
2 |
5 |
1 |
0 |
 |
NAP 401 A 0HV 402 A 0HV 403 A
|
 |
 |
2 |
 |
2.30 |
4.51 |
29.6 |
-0.31 |
0.60 |
5.8 |
75 |
3 |
0 |
5 |
3 |
7 |
0 |
0 |
NAP 401 B 0HV 402 B 0HV 403 B
|
 |
3 |
 |
2.35 |
2.51 |
35.8 |
-2.40 |
-0.60 |
21.2 |
73 |
3 |
3 |
3 |
1 |
1 |
2 |
0 |
|
 |
4 |
 |
1.49 |
1.68 |
40.3 |
-0.79 |
0.21 |
9.0 |
75 |
3 |
1 |
5 |
2 |
8 |
1 |
0 |
0HV 402 B 0HV 403 B
|
 |
5 |
 |
1.49 |
1.64 |
48.4 |
-1.46 |
-0.06 |
11.2 |
75 |
5 |
1 |
5 |
1 |
7 |
1 |
0 |
NAP 401 B 0HV 402 B 0HV 403 B
|
 |
6 |
 |
1.20 |
1.20 |
85.9 |
-1.36 |
-0.17 |
15.1 |
77 |
5 |
4 |
6 |
3 |
6 |
2 |
0 |
0HV 402 A 0HV 403 A
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |