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PDBsum entry 4dbs

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4dbs calculated with MOLE 2.0 PDB id
4dbs
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.93 3.45 28.3 -0.66 0.31 10.9 69 2 1 4 2 5 1 0  NAP 401 A 0HV 402 A 0HV 403 A
2 2.30 4.51 29.6 -0.31 0.60 5.8 75 3 0 5 3 7 0 0  NAP 401 B 0HV 402 B 0HV 403 B
3 2.35 2.51 35.8 -2.40 -0.60 21.2 73 3 3 3 1 1 2 0  
4 1.49 1.68 40.3 -0.79 0.21 9.0 75 3 1 5 2 8 1 0  0HV 402 B 0HV 403 B
5 1.49 1.64 48.4 -1.46 -0.06 11.2 75 5 1 5 1 7 1 0  NAP 401 B 0HV 402 B 0HV 403 B
6 1.20 1.20 85.9 -1.36 -0.17 15.1 77 5 4 6 3 6 2 0  0HV 402 A 0HV 403 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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