PDBsum entry 4da9 Go to PDB code:  Tunnel analysis for: 4da9 calculated with MOLE 2.0 PDB id 4da9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.18 30.3 1.07 0.05 4.3 66 0 2 1 5 3 0 1  MSE 163 D 2 1.18 1.23 34.7 0.82 0.17 7.3 64 1 2 0 4 3 1 1  MSE 163 D 3 1.20 1.20 57.6 -0.82 -0.20 16.9 78 6 2 5 9 3 0 1  MSE 163 D 4 1.20 1.19 58.2 -0.53 -0.16 14.3 80 4 2 6 9 3 0 1  MSE 163 D 5 1.20 1.20 59.6 -0.07 -0.14 11.0 79 5 3 6 8 3 0 2  MSE 163 D 6 1.41 1.40 18.5 0.67 -0.06 6.8 95 1 0 1 6 0 0 0  MSE 132 A 7 1.40 1.40 21.4 0.08 -0.05 13.1 93 2 1 1 5 0 0 0  MSE 132 A 8 1.37 1.43 19.2 0.65 -0.05 7.6 91 1 0 1 7 0 0 0  MSE 132 D 9 1.32 1.43 20.1 0.94 0.45 13.7 82 2 0 0 6 0 0 0  MSE 132 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.