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PDBsum entry 4d7n

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Transcription PDB id
4d7n
Contents
Protein chain
197 a.a.
Ligands
TDC
Metals
_CL ×4
__K ×2
Waters ×156

References listed in PDB file
Key reference
Title Tetracycline repressor allostery does not depend on divalent metal recognition.
Authors S.Werten, D.Dalm, G.J.Palm, C.C.Grimm, W.Hinrichs.
Ref. Biochemistry, 2014, 53, 7990-7998. [DOI no: 10.1021/bi5012805]
PubMed id 25432019
Abstract
Genes that render bacteria resistant to tetracycline-derived antibiotics are tightly regulated by repressors of the TetR family. In their physiologically relevant, magnesium-complexed form, tetracyclines induce allosteric rearrangements in the TetR homodimer, leading to its release from the promoter and derepression of transcription. According to earlier crystallographic work, recognition of the tetracycline-associated magnesium ion by TetR is crucial and triggers the allosteric cascade. Nevertheless, the derivative 5a,6-anhydrotetracycline, which shows an increased affinity for TetR, causes promoter release even in the absence of magnesium. To resolve this paradox, it has been proposed that metal-free 5a,6-anhydrotetracycline acts via an exceptional, conformationally different induction mode that circumvents the normal magnesium requirement. We have tested this hypothesis by determining crystal structures of TetR-5a,6-anhydrotetracycline complexes in the presence of magnesium, ethylenediaminetetraacetic acid, or high concentrations of potassium. Analysis of these three structures reveals that, irrespective of the metal, the effects of 5a,6-anhydrotetracycline binding are indistinguishable from those of canonical induction by other tetracyclines. Together with a close scrutiny of the earlier evidence of a metal-triggered mechanism, these results demonstrate that magnesium recognition per se is not a prerequisite for tetracycline repressor allostery.
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