PDBsum entry 4d4u Go to PDB code:  Pore analysis for: 4d4u calculated with MOLE 2.0 PDB id 4d4u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.03 1.06 54.2 -0.35 -0.49 9.4 83 2 3 2 7 1 1 1   2 1.72 1.84 69.3 -0.85 -0.54 10.7 84 3 2 4 7 1 4 1   3 1.77 1.88 82.9 -1.04 -0.55 12.6 83 5 3 4 7 2 4 1   4 1.72 1.86 86.1 -0.63 -0.58 11.0 86 4 4 2 8 2 2 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.