PDBsum entry 4d4c Go to PDB code:  Tunnel analysis for: 4d4c calculated with MOLE 2.0 PDB id 4d4c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.39 18.2 -2.95 -0.60 30.9 76 4 4 1 0 1 1 0   2 1.35 3.40 24.6 -2.34 -0.01 26.2 80 6 3 2 2 2 0 0   3 1.38 3.51 18.2 -2.66 -0.17 25.5 78 5 3 3 2 2 0 0   4 1.37 3.58 27.1 -2.04 -0.48 20.6 81 3 3 4 3 2 0 0   5 1.26 1.42 15.2 -1.26 0.26 11.0 64 1 2 1 2 4 0 0  DMJ 500 A MAN 501 A 6 1.26 1.42 15.9 -1.01 0.17 12.5 70 1 3 1 2 3 0 0  DMJ 500 A MAN 501 A 7 1.21 1.48 16.9 -0.45 -0.07 16.0 85 2 3 2 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.