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PDBsum entry 4d3b
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Tunnel analysis for: 4d3b calculated with  MOLE 2.0
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PDB id
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4d3b
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.29 |
37.4 |
0.36 |
-0.05 |
6.1 |
73 |
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1 |
1 |
2 |
6 |
4 |
1 |
1 |
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HEM 750 A H4B 760 A ACT 860 A
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2 |
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1.23 |
1.30 |
39.6 |
0.38 |
0.02 |
6.3 |
77 |
1 |
1 |
3 |
7 |
4 |
1 |
1 |
HEM 750 B H4B 760 B ACT 860 B
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3 |
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1.22 |
1.31 |
39.7 |
-1.02 |
-0.10 |
12.9 |
74 |
4 |
4 |
4 |
3 |
5 |
1 |
0 |
HEM 750 B H4B 760 B 6J0 800 B
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4 |
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1.20 |
1.28 |
43.0 |
-0.78 |
-0.13 |
12.6 |
72 |
4 |
3 |
2 |
4 |
4 |
1 |
0 |
HEM 750 A H4B 760 A 6J0 800 A
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5 |
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1.24 |
1.32 |
47.1 |
-0.39 |
-0.11 |
11.7 |
72 |
3 |
2 |
1 |
5 |
5 |
2 |
1 |
HEM 750 B H4B 760 B 6J0 800 B
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6 |
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1.21 |
1.30 |
48.6 |
-0.46 |
-0.01 |
9.5 |
69 |
3 |
3 |
2 |
4 |
5 |
2 |
0 |
HEM 750 A H4B 760 A 6J0 800 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program