PDBsum entry 4d2v

Tunnel analysis for: 4d2v calculated with

MOLE 2.0

PDB id

4d2v

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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with HETATM:

without HETATM:

14 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.12

1.35

30.1

1.60

0.28

3.8

80

0

2

1

7

1

0

0

45R 1334 C

2

1.10

1.21

32.1

2.05

0.50

3.6

77

0

2

0

8

1

0

0

45R 1334 C

3

1.12

1.34

44.0

-0.25

-0.16

15.9

78

2

3

1

5

1

1

0

45R 1334 C

4

1.13

1.23

46.0

0.09

0.03

15.9

76

2

3

0

6

1

1

0

45R 1334 C

5

1.14

1.35

48.8

-0.21

-0.19

16.0

77

3

4

3

4

3

0

2

45R 1334 C

6

1.20

1.26

50.8

-0.19

-0.14

17.0

77

3

4

2

5

2

0

2

45R 1334 C

7

1.30

1.58

78.2

-0.47

-0.24

15.3

79

4

8

3

8

3

0

1

45R 1334 C

8

1.22

1.29

80.2

-0.38

-0.20

15.4

78

4

8

2

9

3

0

1

45R 1334 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.