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PDBsum entry 4cod

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 4cod calculated with MOLE 2.0 PDB id
4cod
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.32 25.1 0.54 0.14 9.2 75 3 0 0 7 2 0 0  NAD 1270 F KV1 1271 F
2 1.34 1.34 28.8 0.13 -0.11 7.5 78 2 0 1 9 2 0 0  NAD 1270 F KV1 1271 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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