PDBsum entry 4c0e

Tunnel analysis for: 4c0e calculated with

MOLE 2.0

PDB id

4c0e

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.25

17.1

-0.62

-0.28

4.4

82

1

2

4

6

1

2

0

MSE 1980 D

2

1.87

1.98

15.4

-0.48

-0.07

8.0

85

0

2

5

3

1

1

0

MSE 1980 C

3

1.20

1.26

15.4

-1.77

-0.74

12.2

89

2

3

3

4

1

0

0

MSE 1980 C

4

2.02

2.83

16.7

-0.98

-0.20

8.6

78

0

3

4

2

1

2

0

MSE 1980 C

5

2.00

2.20

19.7

-1.41

-0.58

13.2

86

2

4

3

5

1

1

0

MSE 1980 C

6

1.77

2.47

22.8

0.25

0.02

9.4

84

1

1

4

7

1

2

0

MSE 1980 C

7

1.81

2.42

24.1

0.19

0.03

9.1

78

1

2

4

7

1

2

0

MSE 1980 C

8

1.24

1.24

27.6

0.08

-0.07

8.2

81

2

2

4

10

1

2

0

MSE 1980 C

9

1.24

1.46

17.1

-1.16

-0.39

17.2

81

2

2

1

8

0

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.