PDBsum entry 4brh

Tunnel analysis for: 4brh calculated with

MOLE 2.0

PDB id

4brh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.35

1.81

28.0

-0.33

-0.31

4.9

83

2

1

4

6

2

1

0

2

1.46

1.46

28.4

0.08

-0.21

6.2

83

3

1

3

6

2

1

0

3

1.46

1.46

29.7

-0.05

-0.24

5.2

81

3

0

4

6

2

1

0

4

1.42

1.42

30.9

-0.67

-0.40

6.2

86

1

2

4

5

2

1

0

TMV 1395 B DVT 1398 B

5

1.48

1.48

32.5

-0.27

-0.26

5.8

85

2

1

4

6

2

1

0

TMV 1395 B DVT 1398 B

6

1.47

1.47

38.6

0.11

-0.17

3.6

87

1

0

4

9

2

1

0

7

1.47

1.47

40.7

-0.06

-0.33

2.9

86

1

0

4

9

2

2

0

8

1.27

1.60

43.9

-0.24

-0.29

3.4

79

1

1

6

7

4

3

0

9

1.15

2.01

15.1

-1.90

-0.40

16.9

76

0

2

2

1

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.