PDBsum entry 4bgd Go to PDB code:  Pore analysis for: 4bgd calculated with MOLE 2.0 PDB id 4bgd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.15 2.40 33.8 -0.96 -0.21 16.1 76 6 3 4 5 5 0 0   2 1.21 1.21 40.1 -1.12 -0.46 18.9 79 4 4 4 7 3 4 1  ADP 3164 A 3 1.57 2.32 42.7 -1.60 -0.37 21.8 81 7 4 7 2 2 1 0   4 2.46 3.80 43.0 -1.86 -0.54 26.6 77 5 9 4 3 5 2 0   5 3.32 3.54 44.6 -3.09 -0.71 33.2 84 8 5 4 0 1 1 0   6 2.00 2.80 48.0 -1.15 -0.27 14.3 82 4 9 7 5 4 4 0   7 1.99 2.58 54.8 -1.54 -0.38 19.7 80 6 6 5 4 5 6 0   8 1.56 2.32 55.3 -2.73 -0.49 33.7 83 8 2 3 1 2 1 0   9 1.91 2.45 94.0 -1.22 -0.46 17.5 84 4 6 10 12 3 3 0   10 2.54 3.04 98.5 -1.67 -0.25 25.4 81 9 10 8 10 3 2 1   11 1.70 1.88 99.8 -1.47 -0.24 19.3 80 7 6 8 9 8 1 1   12 1.86 2.48 101.7 -1.30 -0.44 19.0 82 4 12 11 13 4 5 0   13 2.03 2.43 112.3 -1.06 -0.32 14.6 82 6 9 12 15 4 8 0   14 1.07 1.18 183.7 -1.56 -0.29 24.9 80 20 13 14 15 6 4 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.