 |
PDBsum entry 4bgd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4bgd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4bgd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 tunnels,
coloured by tunnel radius |
|
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.28 |
1.60 |
17.1 |
-0.63 |
-0.50 |
4.4 |
91 |
|
1 |
2 |
6 |
4 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.66 |
1.74 |
20.7 |
-0.80 |
-0.54 |
8.4 |
86 |
0 |
3 |
7 |
6 |
1 |
1 |
0 |
|
|
3 |
 |
1.28 |
1.59 |
22.0 |
-0.87 |
-0.44 |
7.9 |
92 |
1 |
1 |
7 |
5 |
1 |
0 |
0 |
|
|
4 |
 |
1.09 |
1.97 |
17.8 |
1.19 |
0.73 |
6.2 |
83 |
1 |
0 |
4 |
4 |
4 |
0 |
0 |
|
 |
5 |
 |
1.14 |
1.29 |
15.2 |
1.47 |
0.63 |
6.6 |
79 |
1 |
0 |
2 |
6 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program