PDBsum entry 4a3f Go to PDB code:  Pore analysis for: 4a3f calculated with MOLE 2.0 PDB id 4a3f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.94 2.45 35.4 -1.22 -0.22 20.6 79 4 5 4 4 2 0 0   2 1.58 2.30 38.5 -1.71 -0.48 23.9 85 5 6 4 3 2 1 0   3 2.30 3.24 43.2 -1.77 -0.55 16.6 84 2 4 4 3 1 1 0  DT 7 T DC 8 T 4 1.82 1.90 55.5 -1.58 -0.37 21.0 86 6 3 4 5 1 2 0  DC 5 P DC 6 P DT 25 T 5 3.52 3.63 55.6 -1.50 -0.30 23.2 82 9 4 3 5 2 3 0  DT 25 T 6 1.40 1.40 55.9 -2.03 -0.41 23.9 85 7 5 7 3 3 0 0  DT 25 T 7 1.86 1.82 59.9 -1.29 -0.45 16.0 80 5 5 5 4 3 2 0   8 1.90 3.40 86.8 -1.73 -0.57 22.5 83 10 10 8 6 1 2 0  DC 8 T DA 9 T DA 10 T 9 2.30 2.37 92.6 -1.71 -0.48 16.8 89 14 6 15 8 4 1 0   10 1.63 1.80 95.5 -1.19 -0.24 19.6 83 14 6 6 10 2 2 0   11 2.73 2.73 94.5 -0.96 -0.62 9.7 87 3 4 6 5 1 1 0  DT 8 N DT 9 N DG 10 N DA 11 N DT 7 T DC 8 T DG 11 T DT 12 T DA 13 T 12 2.69 2.69 100.7 -1.27 -0.68 12.6 83 5 3 3 3 0 1 0  DA 2 N DT 9 N DG 10 N DA 11 N DG 12 N DC 5 P DA 9 T DA 10 T DG 11 T DT 12 T DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 25 T 13 2.07 2.07 103.0 -2.19 -0.57 27.4 78 8 9 5 2 3 1 0   14 1.82 1.91 105.1 -1.51 -0.51 18.7 84 7 4 5 4 1 2 0  DA 2 N DT 9 N DG 10 N DA 11 N DG 11 T DT 12 T DA 13 T DC 14 T 15 3.74 4.26 105.0 -1.62 -0.58 18.2 85 9 8 9 8 0 4 0  DA 2 N DA 3 N DC 5 P DC 8 T DA 9 T DA 10 T DT 17 T DT 25 T 16 1.93 3.30 107.6 -1.49 -0.44 23.5 81 12 7 5 9 1 2 0  DA 2 N DA 3 N DC 5 P DT 17 T DT 25 T 17 1.39 1.39 109.4 -1.44 -0.10 21.3 81 12 6 11 7 9 1 0   18 1.94 2.04 110.1 -1.83 -0.51 22.1 84 11 10 9 7 1 4 0  DA 2 N DA 3 N DC 8 T DA 9 T DA 10 T 19 1.67 1.92 114.1 -1.19 -0.11 18.5 83 13 7 12 10 7 1 0  DT 25 T 20 2.21 3.15 111.1 -0.81 -0.53 10.7 78 5 3 2 5 0 4 0  DT 9 N DG 10 N DA 11 N DG 12 N DC 6 T DA 9 T DA 10 T DG 11 T DT 12 T DA 13 T 21 1.94 3.47 114.6 -1.91 -0.41 27.0 82 14 10 4 8 2 2 0  DA 2 N DA 3 N 22 1.84 1.93 121.7 -2.00 -0.48 23.1 83 10 6 5 6 1 4 0  DA 2 N DA 3 N DG 4 N DT 5 N DA 6 N DC 7 N DT 8 N DT 7 T DC 8 T DA 9 T DA 10 T DG 11 T DT 12 T 23 1.99 3.40 140.9 -1.20 -0.52 18.4 82 11 6 5 7 1 1 0  DA 2 N DA 3 N DT 9 N DG 10 N DA 11 N DG 11 T DT 12 T DA 13 T DC 14 T DT 17 T 24 1.70 1.89 146.3 -1.39 -0.18 18.8 83 18 8 14 10 8 4 0   25 1.63 1.65 154.2 -1.79 -0.51 25.2 85 11 13 5 6 0 3 0   26 1.61 1.60 192.0 -1.91 -0.53 28.6 83 15 19 3 6 2 2 0   27 1.20 3.40 214.9 -1.95 -0.52 22.3 83 19 18 16 10 3 5 0  DC 8 T DA 9 T DA 10 T 28 1.19 3.37 212.2 -1.94 -0.39 26.1 82 20 17 10 12 4 4 0  DA 2 N DA 3 N 29 1.77 4.08 227.2 -2.08 -0.61 22.6 86 23 19 24 8 1 5 0  DC 8 T DA 9 T DA 10 T 30 1.24 3.26 291.4 -1.63 -0.48 23.2 81 21 19 8 11 5 2 0  DA 2 N DA 3 N DT 9 N DG 10 N DA 11 N DG 12 N DA 9 T DA 10 T DG 11 T DT 12 T DA 13 T DC 14 T DT 17 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.