spacer
spacer

PDBsum entry 4a3b

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4a3b calculated with MOLE 2.0 PDB id
4a3b
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 2.01 22.1 0.17 0.00 12.4 78 2 3 2 6 3 0 0  
2 1.47 1.88 24.8 0.48 0.21 11.5 76 2 3 1 7 4 0 0  
3 1.38 1.38 16.8 0.25 0.32 11.1 78 3 1 1 4 1 0 0  
4 1.46 1.66 18.4 0.58 0.29 12.3 80 2 1 0 4 1 0 0  
5 1.45 1.81 23.8 0.39 0.10 11.2 82 2 1 1 4 1 0 0  
6 1.35 1.34 21.2 -0.20 0.08 5.8 68 1 2 1 5 2 2 0  
7 1.34 1.34 16.6 1.78 0.66 8.0 82 2 0 1 7 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer