PDBsum entry 462d Go to PDB code:  Tunnel analysis for: 462d calculated with MOLE 2.0 PDB id 462d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 2.64 14.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,8 A A,9 G A,10 G A,507 MG A,9 G B,10 G B,11 U B,12 G B,13 C B 2 1.59 17.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  12 G A,13 C A,6 U B,7 G B,8 A B,9 G B,10 G B,506 MG B 3 2.57 17.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 G A,8 A A,9 G A,10 G A,507 MG A,12 G B,13 C B 4 2.06 19.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,8 A A,9 G A,12 G A,508 MG A,9 G B,10 G B,11 U B,12 G B,13 C B 5 2.55 19.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 C A,6 U A,7 G A,8 A A,9 G A,10 G A,501 MG A,507 MG A,13 C B,14 A B,15 C B 6 2.95 22.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 G A,10 G A,11 U A,12 G A,13 C A,508 MG A,6 U B, 7 G B,8 A B,9 G B,506 MG B 7 2.07 23.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 G A,8 A A,9 G A,12 G A,508 MG A,9 G B,10 G B,11 U B,12 G B,13 C B 8 1.57 28.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 C A,6 U A,7 G A,8 A A,9 G A,12 G A,501 MG A,508 MG A,9 G B,10 G B,11 U B,12 G B,13 C B,14 A B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.