PDBsum entry 3zk5

Pore analysis for: 3zk5 calculated with

MOLE 2.0

PDB id

3zk5

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.21

2.36

26.2

-1.56

-0.24

20.6

82

2

3

1

4

2

1

0

2

1.34

1.47

44.7

-0.28

-0.11

12.7

84

3

3

2

10

2

3

0

HEM 1407 A Z18 1408 A

3

1.22

1.21

77.2

-0.01

-0.03

9.5

81

2

5

1

15

6

1

1

HEM 1407 B Z18 1408 B

4

1.43

2.69

115.7

0.20

-0.06

9.2

82

3

9

8

22

5

2

1

HEM 1407 B Z18 1408 B

5

1.47

1.76

126.7

-1.23

-0.58

13.0

79

2

9

2

6

3

5

0

6

1.37

1.38

147.3

-0.13

-0.19

11.5

83

5

11

9

22

4

1

1

HEM 1407 B Z18 1408 B

7

1.67

1.90

150.2

-1.49

-0.44

19.1

82

6

12

5

8

2

6

0

8

1.33

1.31

152.7

-0.39

-0.19

10.8

79

2

9

3

15

5

4

1

HEM 1407 B Z18 1408 B

9

1.31

1.30

186.8

-1.10

-0.60

13.4

87

4

12

10

10

1

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.