PDBsum entry 3x0c

Tunnel analysis for: 3x0c calculated with

MOLE 2.0

PDB id

3x0c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

3.42

27.4

-0.70

-0.06

10.4

81

2

2

5

4

3

1

0

2

1.25

1.25

18.1

-0.49

-0.13

14.5

80

2

2

1

5

2

1

0

3

1.25

1.25

25.3

-0.25

-0.05

17.8

80

5

2

1

4

2

1

0

4

1.26

1.26

29.2

0.66

0.21

10.5

78

3

2

1

5

2

1

0

5

1.60

2.20

17.2

-0.04

-0.03

7.6

77

1

1

2

3

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.