PDBsum entry 3wpd Go to PDB code:  Tunnel analysis for: 3wpd calculated with MOLE 2.0 PDB id 3wpd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 1.28 16.7 0.86 -0.01 2.7 84 0 1 3 6 0 0 0   2 1.33 2.75 17.0 1.20 0.12 1.7 84 0 0 3 8 0 0 0   3 1.27 1.96 19.8 1.34 0.15 1.6 81 0 0 3 9 0 0 0   4 1.28 1.28 17.2 0.98 0.27 8.6 71 2 1 1 4 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.