PDBsum entry 3w3u Go to PDB code:  Tunnel analysis for: 3w3u calculated with MOLE 2.0 PDB id 3w3u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.76 19.4 -1.60 -0.54 19.7 89 2 1 2 1 0 1 0   2 1.41 1.45 21.4 -0.40 -0.22 17.3 78 0 2 2 4 2 1 0   3 1.56 1.85 21.5 -0.87 -0.10 16.1 70 1 2 2 3 2 1 0   4 1.17 2.26 16.4 -2.43 -0.50 33.9 79 3 2 0 0 1 0 0   5 1.27 1.71 29.9 -1.08 -0.48 10.7 84 1 1 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.