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PDBsum entry 3w3s
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Pore analysis for: 3w3s calculated with MOLE 2.0 PDB id
3w3s
Pores calculated on whole structure Pores calculated excluding ligands
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22 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.29 3.36 31.1 -1.26 -0.36 23.7 79 2 5 0 3 0 1 0  
2 2.87 2.93 35.7 -1.44 -0.72 16.7 79 4 1 0 0 0 0 0  SO4 2018 A U 20 B G 20 B i:A U 43 B i:A C 47 B i:
S C 47 B i:R U 47 B i:Q G 53 B A 58 B U 59 B
3 2.31 2.31 37.9 -0.82 -0.76 8.3 83 0 0 0 0 0 0 0  SO4 2018 A A 5 B i:A G 6 B G 7 B U 8 B U 9 B G 10
B G 11 B C 12 B G 13 B G 14 B G 20 B i:A C 21 B C
22 B G 43 B U 43 B i:A C 68 B
4 3.07 3.97 40.2 -1.95 -0.40 28.0 73 6 3 0 3 1 1 0  PT 2009 A G 47 B i:B U 47 B i:C A 47 B i:J G 47 B
i:K G 47 B i:A SO4 102 B
5 2.68 2.68 41.6 -0.70 -0.77 7.0 83 2 0 0 0 0 0 0  SO4 2018 A U 9 B G 10 B G 20 B i:A C 21 B C 22 B
G 23 B C 24 B C 25 B C 26 B A 37 B A 38 B U 39 B
C 40 B C 41 B C 42 B G 43 B U 43 B i:A G 44 B
6 1.42 1.67 41.8 -0.76 -0.04 17.0 63 4 3 0 4 4 3 0  MSE 269 A
7 2.34 2.34 42.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 5 B i:A G 6 B G 7 B U 8 B G 10 B G 11 B C 12 B
G 13 B G 14 B C 21 B C 22 B G 23 B C 24 B C 25 B
C 26 B A 37 B A 38 B U 39 B C 40 B C 41 B C 42 B
G 43 B G 44 B C 68 B
8 3.03 3.03 44.6 -0.71 -0.77 7.0 83 2 0 0 0 0 0 0  SO4 2018 A U 9 B G 10 B G 20 B i:A C 21 B C 22 B
G 23 B C 24 B C 25 B C 26 B C 27 B G 28 B G 29 B
A 37 B A 38 B C 40 B C 41 B C 42 B G 43 B U 43 B
i:A G 44 B
9 3.31 3.31 45.0 -0.69 -0.77 7.0 77 4 0 0 0 0 0 0  SO4 2018 A G 20 B i:A U 43 B i:A G 44 B G 45 B G
46 B G 47 B i:K G 47 B i:A A 47 B G 47 B i:L G 47
B i:M G 47 B i:O C 47 B i:P U 47 B i:Q C 47 B i:R
SO4 101 B
10 2.32 2.32 45.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 5 B i:A G 6 B G 7 B U 8 B G 10 B G 11 B C 12 B
G 13 B G 14 B C 21 B C 22 B G 23 B C 24 B C 25 B
C 26 B C 27 B G 28 B G 29 B A 37 B A 38 B C 40 B
C 41 B C 42 B G 43 B G 44 B C 68 B
11 2.49 2.49 45.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 2 B A 4 B G 5 B A 5 B i:A G 6 B G 13 B G 14 B C
15 B C 61 B C 62 B C 63 B U 64 B C 65 B C 66 B C
67 B
12 2.51 2.55 57.6 -1.76 -0.53 25.4 80 8 4 0 3 0 0 0  MSE 78 A PT 2008 A PT 2015 A U 47 B i:Q G 47 B i:
B G 47 B i:A U 47 B i:C A 47 B i:J G 47 B i:K SO4
102 B
13 2.49 2.49 65.1 -0.68 -0.79 6.9 80 1 1 0 0 0 0 0  A 5 B i:A G 6 B G 7 B G 13 B G 14 B C 15 B C 47 B
i:S G 48 B G 49 B A 50 B G 51 B G 52 B G 53 B A
58 B U 59 B U 60 B C 61 B C 62 B U 64 B
14 1.45 1.43 70.2 -1.62 -0.31 27.5 74 10 5 0 6 1 2 0  MSE 78 A PT 2008 A PT 2009 A PT 2015 A G 47 B i:B
G 47 B i:A U 47 B i:Q
15 1.35 1.35 75.6 -1.09 -0.78 13.0 80 0 0 0 0 0 0 0  G 2 B A 4 B G 5 B G 6 B G 7 B C 47 B i:S G 48 B G
49 B A 50 B G 51 B G 52 B G 53 B A 58 B U 59 B U
60 B C 62 B C 63 B U 64 B C 65 B C 66 B C 67 B
16 2.50 2.54 95.3 -1.33 -0.72 15.6 82 0 0 0 0 0 0 0  G 2 B A 4 B G 5 B G 6 B G 7 B C 47 B i:S C 47 B i:
R A 47 B G 47 B i:A G 47 B i:B U 47 B i:C A 47 B
i:J G 47 B i:K G 48 B G 49 B A 50 B G 51 B G 52 B
G 53 B A 58 B U 59 B U 60 B C 62 B C 63 B U 64 B
C 65 B C 66 B C 67 B SO4 102 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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