 |
PDBsum entry 3vuf
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3vuf calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3vuf
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.28 |
1.54 |
23.1 |
0.96 |
0.36 |
10.8 |
86 |
|
2 |
0 |
0 |
4 |
1 |
0 |
0 |
|
ADP 701 A
|
 |
|
2 |
 |
1.27 |
1.53 |
26.0 |
0.65 |
0.42 |
12.0 |
76 |
3 |
1 |
1 |
5 |
2 |
0 |
0 |
ADP 701 A
|
|
3 |
 |
1.24 |
1.57 |
29.4 |
-1.07 |
-0.19 |
21.3 |
79 |
3 |
3 |
2 |
6 |
1 |
0 |
0 |
ADP 701 A
|
|
4 |
 |
1.24 |
1.42 |
16.1 |
-0.55 |
-0.39 |
14.5 |
89 |
1 |
3 |
2 |
3 |
1 |
0 |
0 |
|
|
5 |
 |
1.24 |
1.29 |
17.5 |
-0.41 |
-0.45 |
9.1 |
86 |
0 |
2 |
3 |
3 |
2 |
0 |
0 |
|
 |
6 |
 |
1.27 |
1.27 |
15.0 |
-0.06 |
0.29 |
17.0 |
80 |
1 |
2 |
0 |
3 |
1 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program