PDBsum entry 3vth Go to PDB code:  Tunnel analysis for: 3vth calculated with MOLE 2.0 PDB id 3vth Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.30 51.9 -1.21 -0.24 21.3 86 8 3 2 6 0 1 0  APC 804 B 2 1.16 1.44 55.1 -1.75 -0.32 26.2 81 7 5 2 5 3 1 0  APC 804 B 3 1.10 1.28 31.8 0.27 0.39 11.4 83 3 2 2 8 2 1 0   4 1.32 1.35 16.8 -1.58 -0.48 15.7 69 1 1 1 1 1 0 0   5 1.31 1.35 26.3 -1.74 -0.67 15.3 80 1 2 3 0 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.