PDBsum entry 3vs3 Go to PDB code:  Tunnel analysis for: 3vs3 calculated with MOLE 2.0 PDB id 3vs3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.71 40.1 -0.13 0.00 10.2 85 2 4 6 5 3 0 0   2 1.14 1.71 48.2 -1.55 -0.12 24.9 83 5 4 5 4 2 1 0   3 1.33 1.48 28.2 1.58 0.45 7.4 84 1 2 1 9 1 0 0  VSE 601 B 4 1.33 1.53 28.5 0.88 0.16 9.4 88 1 2 2 9 1 0 0  VSE 601 B 5 1.29 1.62 16.5 0.14 -0.13 9.3 87 1 1 2 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.