PDBsum entry 3vqy Go to PDB code:  Tunnel analysis for: 3vqy calculated with MOLE 2.0 PDB id 3vqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.47 3.61 15.7 1.22 1.14 1.2 78 0 0 0 9 2 0 0  LBY 502 A 2 1.47 3.62 22.5 0.78 0.53 1.4 85 0 0 2 7 2 0 0  ANP 501 A LBY 502 A MG 504 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.