PDBsum entry 3vqs Go to PDB code:  Pore analysis for: 3vqs calculated with MOLE 2.0 PDB id 3vqs Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.41 2.50 46.6 -1.90 -0.25 29.2 85 9 1 3 3 0 1 0   2 3.32 3.32 46.9 -1.87 -0.40 25.4 83 6 3 4 2 1 1 1   3 1.63 1.63 51.1 -1.07 -0.42 16.4 81 7 4 4 3 3 0 0  JT1 1000 D 4 1.62 3.00 57.0 -1.50 -0.06 18.4 80 9 4 7 4 4 0 1  JT1 601 C 5 1.79 3.10 57.6 -0.41 0.04 7.0 81 4 1 9 6 4 1 2  JT1 601 C 6 1.99 1.99 59.0 -0.93 -0.20 15.9 82 5 0 3 5 1 0 0  JT1 1000 A 7 1.89 2.08 64.4 -0.68 -0.18 15.2 82 7 3 5 7 1 1 0  JT1 1000 A 8 2.46 2.39 137.6 -1.15 -0.31 18.2 86 13 4 7 9 1 1 1   9 1.80 3.11 148.2 -0.49 -0.09 9.4 85 11 2 12 13 4 1 2  JT1 601 C 10 1.17 1.44 25.6 -2.56 -0.84 15.8 85 1 2 2 0 0 1 0   11 1.45 1.48 33.3 -2.75 -0.88 24.3 83 4 3 2 0 0 1 0   12 2.91 4.34 43.3 -1.52 -0.43 19.1 86 4 4 4 3 1 1 1   13 1.49 1.53 46.2 -2.84 -0.78 29.0 82 5 3 3 0 0 1 0   14 2.91 4.34 50.4 -1.93 -0.42 24.8 83 7 3 4 3 1 1 1   15 1.69 3.11 56.1 -1.80 -0.08 24.1 77 9 3 4 3 5 0 1  JT1 601 B 16 1.86 3.11 62.6 -0.77 -0.14 10.1 82 5 3 8 6 4 1 2  JT1 601 B 17 1.68 3.10 63.1 -1.45 -0.22 15.8 83 7 5 7 3 5 0 1  JT1 601 B 18 1.69 3.10 67.9 -1.52 -0.03 17.4 79 7 3 5 3 5 1 1  JT1 601 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.