PDBsum entry 3vqr Go to PDB code:  Tunnel analysis for: 3vqr calculated with MOLE 2.0 PDB id 3vqr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.56 38.0 0.08 -0.06 7.2 84 2 2 2 6 3 0 0  FAD 1001 A ACT 1002 A 2 1.33 1.56 38.2 -0.14 -0.12 8.4 84 2 4 3 4 3 0 0  FAD 1001 A ACT 1002 A 3 1.30 1.56 51.9 -0.65 0.05 17.1 76 3 4 3 7 5 0 0  FAD 1001 A 4 1.30 1.55 55.2 -0.42 0.02 10.5 73 3 3 3 8 6 1 0  FAD 1001 A 5 1.50 1.69 16.5 -1.47 -0.44 20.8 85 2 1 1 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.