PDBsum entry 3vqe Go to PDB code:  Tunnel analysis for: 3vqe calculated with MOLE 2.0 PDB id 3vqe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.45 27.0 -2.33 -0.37 31.6 70 6 5 0 2 3 2 0   2 1.24 1.59 16.3 1.22 0.46 1.5 72 0 0 1 6 1 0 1   3 1.25 1.56 18.2 1.35 0.05 1.1 78 0 0 0 6 1 0 1   4 1.27 1.60 20.2 -0.05 0.19 13.9 70 1 2 0 3 3 1 0  FMQ 306 B 5 1.44 1.61 16.6 -1.50 -0.15 18.4 71 3 1 1 1 2 1 0  FMQ 1006 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.