PDBsum entry 3vq5 Go to PDB code:  Tunnel analysis for: 3vq5 calculated with MOLE 2.0 PDB id 3vq5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.61 1.78 16.9 -1.46 -0.21 18.4 71 3 1 1 1 2 1 0  MMJ 307 B 2 1.49 2.89 18.7 -0.54 0.04 12.8 66 1 2 0 2 3 1 0  MMJ 307 B 3 1.60 1.86 15.2 -0.66 -0.02 11.9 72 3 1 1 2 3 1 0  MMJ 1007 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.