PDBsum entry 3vms Go to PDB code:  Tunnel analysis for: 3vms calculated with MOLE 2.0 PDB id 3vms Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.74 23.4 2.15 0.67 2.1 84 1 0 1 7 2 0 0   2 1.27 1.75 16.7 -1.28 -0.69 14.6 90 2 2 1 1 0 0 0   3 1.33 3.18 19.3 -0.37 -0.23 11.3 75 1 2 1 2 2 0 0   4 1.67 1.77 15.5 -1.43 -0.54 2.7 80 0 0 3 1 1 0 0   5 1.15 1.15 18.1 -1.73 -0.75 9.9 95 2 1 4 0 0 0 0   6 1.11 1.11 19.3 -1.80 -0.62 9.3 90 3 0 4 0 1 0 0   7 1.39 2.82 15.1 1.93 0.74 5.6 77 1 0 1 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.