PDBsum entry 3vll Go to PDB code:  Tunnel analysis for: 3vll calculated with MOLE 2.0 PDB id 3vll Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 2.25 46.6 -0.27 0.33 12.5 77 4 5 1 9 4 1 0  HEM 800 A SHA 801 A 2 1.23 2.25 50.4 -0.40 0.39 13.5 77 6 1 1 9 5 1 0  HEM 800 A SHA 801 A 3 1.23 1.28 27.4 -1.31 -0.44 13.8 77 3 1 6 4 2 0 0   4 1.34 2.22 18.5 -0.90 -0.42 11.5 84 1 1 3 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.