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PDBsum entry 3vld
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Pore analysis for: 3vld calculated with  MOLE 2.0
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PDB id
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3vld
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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11 pores,
coloured by radius |
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9 pores,
coloured by radius
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9 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.98 |
2.84 |
48.8 |
-1.69 |
-0.45 |
30.3 |
85 |
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7 |
12 |
1 |
4 |
0 |
0 |
0 |
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2 |
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1.62 |
1.62 |
56.3 |
-1.40 |
-0.49 |
25.4 |
86 |
7 |
7 |
2 |
4 |
0 |
0 |
0 |
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3 |
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1.14 |
1.11 |
64.5 |
-1.18 |
-0.48 |
10.8 |
79 |
1 |
3 |
4 |
2 |
3 |
0 |
1 |
MSE 356 B
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4 |
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1.56 |
1.83 |
83.4 |
-1.19 |
-0.47 |
20.3 |
83 |
7 |
7 |
3 |
5 |
1 |
1 |
0 |
MSE 86 B
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5 |
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1.18 |
2.37 |
93.4 |
-0.44 |
-0.08 |
17.8 |
83 |
6 |
8 |
5 |
11 |
3 |
0 |
0 |
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6 |
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1.17 |
1.14 |
96.9 |
-1.70 |
-0.34 |
24.3 |
81 |
6 |
8 |
6 |
3 |
3 |
1 |
1 |
MSE 356 B
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7 |
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1.21 |
2.30 |
107.8 |
-1.34 |
-0.32 |
23.9 |
83 |
9 |
12 |
6 |
10 |
3 |
0 |
0 |
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8 |
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1.14 |
1.15 |
110.8 |
-1.16 |
-0.24 |
14.1 |
83 |
4 |
3 |
10 |
7 |
5 |
0 |
1 |
MSE 356 B
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9 |
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1.17 |
2.27 |
138.5 |
-0.21 |
-0.16 |
13.4 |
81 |
8 |
6 |
7 |
14 |
4 |
1 |
0 |
MSE 86 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program