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PDBsum entry 3vkb
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Tunnel analysis for: 3vkb calculated with  MOLE 2.0
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PDB id
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3vkb
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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1 tunnel,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.23 |
15.6 |
-0.37 |
-0.25 |
11.6 |
85 |
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2 |
1 |
0 |
3 |
1 |
0 |
0 |
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2 |
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1.13 |
1.21 |
27.4 |
0.08 |
-0.03 |
6.2 |
72 |
3 |
1 |
1 |
3 |
3 |
3 |
0 |
FPS 900 B
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3 |
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1.14 |
1.17 |
29.7 |
-0.91 |
-0.14 |
14.3 |
75 |
4 |
3 |
1 |
4 |
3 |
3 |
0 |
POP 800 B FPS 900 B
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4 |
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1.28 |
1.28 |
15.4 |
1.66 |
0.59 |
7.6 |
73 |
2 |
0 |
0 |
6 |
1 |
1 |
0 |
CL 750 A
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5 |
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1.28 |
1.28 |
16.6 |
1.48 |
0.50 |
7.3 |
77 |
2 |
0 |
0 |
7 |
2 |
1 |
0 |
CL 750 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program