PDBsum entry 3vh8 Go to PDB code:  Pore analysis for: 3vh8 calculated with MOLE 2.0 PDB id 3vh8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.89 4.05 33.2 -2.00 -0.37 24.0 80 6 2 1 4 0 3 0  NAG 300 H 2 2.07 2.15 36.1 -2.34 -0.72 22.2 85 7 2 6 2 0 1 0  NAG 301 H 3 1.84 2.98 38.5 -1.95 -0.36 29.5 80 6 5 1 3 0 2 0  NAG 300 H 4 1.64 2.67 40.3 -2.51 -0.30 34.9 78 8 4 1 2 1 2 0   5 1.63 2.68 44.7 -2.22 -0.30 26.8 83 7 1 1 4 0 2 0   6 1.83 2.96 47.5 -2.44 -0.41 29.9 81 8 5 1 5 0 2 0   7 2.88 3.91 51.5 -1.84 -0.38 22.5 83 9 3 5 2 2 1 0   8 1.66 2.11 51.8 -0.46 -0.28 14.1 82 5 2 3 6 0 1 0   9 2.09 2.17 52.2 -1.12 -0.46 14.9 86 6 3 6 4 0 3 0  NAG 300 H NAG 301 H 10 3.08 4.43 59.3 -2.33 -0.33 27.5 77 8 4 1 2 1 3 0  NAG 300 H 11 1.68 2.09 61.4 -0.18 -0.15 13.5 82 5 3 2 8 0 3 0  NAG 300 H 12 1.63 2.68 61.8 -2.57 -0.28 33.0 78 8 5 1 4 1 3 0  NAG 300 H 13 2.51 3.47 64.3 -2.42 -0.53 29.2 85 6 4 3 2 1 1 0   14 1.62 1.71 68.2 -1.28 -0.33 18.6 83 6 3 6 4 3 1 0   15 1.66 2.10 68.1 -0.66 -0.20 16.3 82 4 4 2 8 0 3 0  NAG 300 H 16 1.65 1.70 82.0 -1.81 -0.33 23.3 82 10 4 6 3 3 2 0   17 1.18 2.03 100.2 -2.34 -0.34 27.2 80 14 5 5 2 4 3 0   18 2.25 2.50 31.0 -1.79 -0.35 20.1 81 4 5 5 1 4 1 0   19 2.21 5.61 36.3 -1.95 -0.26 22.5 82 5 4 5 1 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.