spacer
spacer

PDBsum entry 3vgi
Go to PDB code: 
Top Page protein ligands metals links
Hydrolase PDB id
3vgi
Contents
Protein chain
270 a.a.
Ligands
NHE ×2
GOL ×11
Metals
_CA
Waters ×328
procheck   Generate full PROCHECK analyses

PROCHECK summary for 3vgi

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          201       87.8%*  
Additional allowed regions [a,b,l,p]         27       11.8%          
Generously allowed regions [~a,~b,~l,~p]      0        0.0%          
Disallowed regions         [XX]               1        0.4%*  
                                           ----      ------
Non-glycine and non-proline residues        229      100.0%

End-residues (excl. Gly and Pro)              2

Glycine residues                             19
Proline residues                             20
                                           ----
Total number of residues                    270

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.34      
     Chi1-chi2 distribution           0.05      
     Chi1 only                        0.25      
     Chi3 & chi4                      0.33      
     Omega                           -0.82*     
                                                  -0.33      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -0.09      
     Main-chain bond angles          -0.17      
                                                  -0.14      
                                                  =====

     OVERALL AVERAGE                              -0.25      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

spacer
spacer