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PDBsum entry 3vff
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Pore analysis for: 3vff calculated with  MOLE 2.0
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PDB id
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3vff
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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5 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.96 |
3.49 |
35.2 |
-1.09 |
-0.46 |
11.8 |
92 |
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5 |
1 |
4 |
4 |
1 |
0 |
1 |
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CD8 301 B
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2 |
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1.68 |
2.07 |
46.5 |
-1.37 |
-0.24 |
15.8 |
83 |
4 |
1 |
0 |
3 |
2 |
1 |
0 |
CD8 301 C PO4 302 D
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3 |
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1.33 |
1.33 |
50.7 |
-1.39 |
-0.62 |
14.4 |
90 |
6 |
3 |
6 |
5 |
1 |
1 |
0 |
PO4 302 C CD8 301 D
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4 |
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1.51 |
1.53 |
75.5 |
-0.69 |
-0.36 |
11.6 |
84 |
3 |
5 |
6 |
5 |
2 |
2 |
0 |
CD8 301 A
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5 |
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1.38 |
1.47 |
94.5 |
-1.23 |
-0.46 |
18.6 |
86 |
5 |
5 |
3 |
8 |
3 |
1 |
0 |
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6 |
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1.23 |
1.38 |
150.6 |
-0.93 |
-0.34 |
15.9 |
82 |
9 |
7 |
2 |
12 |
4 |
4 |
0 |
CD8 301 C PO4 302 C PO4 302 D
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7 |
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1.29 |
1.85 |
178.2 |
-1.40 |
-0.41 |
20.6 |
84 |
14 |
8 |
0 |
12 |
5 |
2 |
0 |
CD8 301 C PO4 302 C PO4 302 D
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8 |
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1.23 |
1.24 |
235.1 |
-1.18 |
-0.46 |
16.4 |
85 |
14 |
12 |
7 |
14 |
7 |
4 |
0 |
CD8 301 A PO4 302 C PO4 302 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program