PDBsum entry 3vba Go to PDB code:  Tunnel analysis for: 3vba calculated with MOLE 2.0 PDB id 3vba Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.48 24.7 0.03 -0.03 5.4 77 0 2 1 5 1 0 0   2 1.52 1.53 24.2 0.69 0.40 7.8 74 2 2 1 6 1 1 0   3 1.31 1.44 34.8 -0.33 0.09 8.2 71 2 1 2 6 2 2 0   4 1.17 1.20 17.1 -2.06 -0.67 22.0 81 2 2 3 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.