PDBsum entry 3v9c Go to PDB code:  Tunnel analysis for: 3v9c calculated with MOLE 2.0 PDB id 3v9c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 2.26 43.8 -1.09 -0.47 14.8 86 4 5 3 3 3 0 0   2 1.27 1.30 20.4 0.30 -0.07 4.7 79 2 0 1 5 1 2 0   3 1.45 1.45 23.2 -1.40 -0.13 26.9 76 4 2 2 1 3 1 0   4 1.14 1.17 20.0 -1.15 0.01 9.6 66 2 3 0 0 3 2 2   5 1.18 1.18 19.3 -0.85 -0.38 4.3 82 0 1 2 2 1 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.