PDBsum entry 3v98 Go to PDB code:  Tunnel analysis for: 3v98 calculated with MOLE 2.0 PDB id 3v98 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.46 88.4 -0.61 0.02 11.1 78 6 5 10 10 6 1 0   2 1.29 1.47 95.7 -1.08 -0.10 15.2 78 7 7 10 9 9 0 0   3 1.50 1.74 19.4 -0.11 0.15 10.3 71 2 0 1 4 2 0 0   4 1.49 1.68 22.7 -0.23 0.14 11.5 75 3 1 1 5 2 0 0   5 1.24 1.38 15.1 0.71 0.80 5.3 60 0 1 2 2 5 2 0   6 1.21 1.33 18.0 0.53 0.61 5.9 62 1 1 2 2 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.