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PDBsum entry 3v8x
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Pore analysis for: 3v8x calculated with  MOLE 2.0
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PDB id
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3v8x
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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18 pores,
coloured by radius |
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14 pores,
coloured by radius
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14 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.25 |
2.04 |
35.2 |
-0.49 |
0.02 |
12.4 |
84 |
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3 |
1 |
3 |
3 |
2 |
2 |
0 |
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2 |
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1.36 |
4.19 |
44.3 |
-2.87 |
-0.53 |
35.6 |
74 |
6 |
5 |
1 |
1 |
2 |
1 |
0 |
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3 |
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1.09 |
1.54 |
57.4 |
-2.06 |
-0.41 |
18.2 |
85 |
5 |
2 |
6 |
1 |
4 |
0 |
0 |
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4 |
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3.05 |
4.83 |
63.2 |
-2.15 |
-0.39 |
22.3 |
85 |
5 |
3 |
7 |
3 |
2 |
3 |
0 |
NAG 1 D NAG 2 D BMA 3 D MAN 4 D MAN 8 D NAG 9 D
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5 |
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1.14 |
2.35 |
63.8 |
-0.51 |
-0.13 |
15.4 |
74 |
8 |
3 |
4 |
6 |
7 |
0 |
0 |
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6 |
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1.12 |
1.54 |
67.3 |
-1.75 |
-0.46 |
14.4 |
85 |
5 |
2 |
8 |
2 |
3 |
2 |
0 |
NAG 1 D NAG 2 D BMA 3 D MAN 4 D
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7 |
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1.21 |
1.35 |
90.9 |
-1.25 |
-0.47 |
15.2 |
88 |
10 |
4 |
8 |
8 |
2 |
2 |
0 |
NAG 1 D NAG 2 D BMA 3 D MAN 4 D
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8 |
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1.30 |
1.36 |
99.2 |
-1.17 |
-0.54 |
16.5 |
82 |
3 |
7 |
4 |
4 |
0 |
4 |
0 |
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9 |
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1.26 |
4.04 |
110.1 |
-1.78 |
-0.21 |
27.9 |
75 |
8 |
8 |
3 |
4 |
5 |
1 |
1 |
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10 |
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1.98 |
2.92 |
121.1 |
-2.26 |
-0.37 |
23.6 |
79 |
11 |
5 |
7 |
5 |
6 |
3 |
0 |
NAG 1 C NAG 2 C BMA 3 C MAN 4 C SIA 7 C MAN 8 C N
AG 9 C GAL 10 C NAG 1 D NAG 2 D BMA 3 D MAN 4 D
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11 |
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1.19 |
1.57 |
124.5 |
-1.80 |
-0.58 |
21.9 |
82 |
9 |
10 |
7 |
4 |
2 |
1 |
2 |
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12 |
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1.24 |
4.04 |
144.6 |
-1.44 |
-0.27 |
22.7 |
82 |
8 |
10 |
5 |
9 |
4 |
2 |
0 |
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13 |
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1.18 |
2.52 |
162.5 |
-1.90 |
-0.47 |
18.0 |
83 |
12 |
6 |
14 |
10 |
4 |
4 |
0 |
C8E 1002 A NAG 1 C NAG 2 C BMA 3 C MAN 4 C NAG 5
C MAN 8 C NAG 1 D NAG 2 D BMA 3 D MAN 4 D MAN 8 D
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14 |
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1.40 |
2.91 |
177.2 |
-2.05 |
-0.52 |
24.2 |
82 |
15 |
9 |
8 |
6 |
3 |
2 |
2 |
NAG 1 C NAG 2 C BMA 3 C MAN 4 C SIA 7 C MAN 8 C N
AG 9 C GAL 10 C NAG 1 D NAG 2 D BMA 3 D MAN 4 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program