PDBsum entry 3v8v Go to PDB code:  Pore analysis for: 3v8v calculated with MOLE 2.0 PDB id 3v8v Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 2.98 28.6 -1.83 -0.61 22.7 81 4 4 1 3 0 0 0  GLC 1 D TRV 2 D 2 1.70 1.72 28.8 -1.71 -0.73 19.8 82 4 4 1 2 0 0 0  GLC 1 D TRV 2 D 3 2.63 2.75 31.0 -2.52 -0.60 30.6 83 4 4 2 0 2 0 0   4 2.06 2.37 35.1 -1.82 -0.45 21.3 79 4 5 2 3 3 0 0   5 1.40 3.19 43.0 -1.89 -0.59 23.7 82 6 3 2 3 1 0 0  GLC 1 D TRV 2 D 6 1.68 1.70 43.2 -1.79 -0.68 21.5 83 6 3 2 2 1 0 0  GLC 1 D TRV 2 D 7 1.69 1.91 50.8 -0.51 -0.09 12.1 77 2 3 4 6 5 1 0  SAM 802 A 8 1.97 2.10 66.3 -1.49 -0.45 21.8 82 3 4 2 4 3 0 0  SAM 802 A 9 1.70 1.91 83.3 -1.09 -0.21 16.2 80 5 5 7 5 7 1 0  SAM 802 A 10 1.39 2.97 83.4 -1.75 -0.56 23.3 83 5 6 2 7 1 0 0  SAM 802 A GLC 1 D TRV 2 D 11 1.69 1.71 84.8 -1.53 -0.52 18.2 81 5 3 3 6 2 0 0  SAM 802 A GLC 1 D TRV 2 D 12 1.83 2.84 85.6 -1.48 -0.33 19.7 82 4 4 4 4 3 3 0  SAM 801 B 13 1.72 1.91 97.7 -1.15 -0.28 15.2 78 5 4 8 6 6 1 0  SAM 802 A GLC 1 D TRV 2 D 14 1.72 1.78 48.3 0.04 -0.11 13.3 89 3 1 4 7 0 1 0  SAM 801 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.