PDBsum entry 3v8s Go to PDB code:  Pore analysis for: 3v8s calculated with MOLE 2.0 PDB id 3v8s Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.52 3.93 33.1 -1.57 -0.39 24.1 79 2 7 1 2 2 1 0   2 1.88 2.01 34.7 -0.96 0.05 22.1 82 4 4 3 4 3 0 0   3 3.51 3.74 35.1 -0.76 -0.34 16.1 83 1 6 2 3 2 2 0   4 1.22 1.50 37.8 -0.12 -0.15 6.5 79 1 3 3 3 2 3 0   5 1.30 1.50 41.6 -1.39 -0.32 16.9 79 3 4 4 3 3 1 1   6 1.27 1.47 56.1 -1.87 -0.54 17.9 77 5 7 6 2 3 2 2   7 1.62 3.68 68.9 -2.05 -0.41 22.4 79 6 6 5 3 4 1 1   8 1.30 1.47 70.4 -1.64 -0.40 20.7 80 7 6 5 2 3 1 1   9 1.66 1.82 73.5 -1.60 -0.48 18.5 82 6 6 3 0 3 1 1   10 1.66 2.98 77.2 -1.57 -0.26 20.3 82 6 2 4 0 3 1 0   11 1.61 3.65 83.2 -1.76 -0.23 25.0 82 8 5 4 3 4 0 0   12 1.65 1.81 86.9 -2.00 -0.65 16.3 82 2 4 5 0 2 1 1   13 1.30 1.48 87.9 -1.93 -0.50 18.7 79 4 5 7 2 3 2 1   14 1.18 1.16 90.6 -1.60 -0.57 21.0 81 7 11 4 3 4 1 1  0HD 501 B 15 1.35 1.55 92.2 -1.56 -0.32 21.4 79 6 10 6 4 4 4 0   16 1.61 3.63 100.7 -2.20 -0.31 25.0 80 5 4 6 3 4 1 0   17 1.28 1.51 106.0 -1.96 -0.47 25.1 83 6 11 7 3 2 3 0   18 1.24 1.50 205.5 -1.83 -0.48 25.3 82 10 19 10 6 7 2 0  0HD 501 B 19 1.82 2.16 31.4 -0.53 -0.48 12.9 83 0 3 1 3 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.