PDBsum entry 3v8s Go to PDB code:  Tunnel analysis for: 3v8s calculated with MOLE 2.0 PDB id 3v8s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.65 23.1 -0.01 -0.10 11.7 83 1 1 1 3 1 0 2   2 1.25 1.25 23.5 -0.18 -0.26 11.1 88 1 1 2 4 2 0 1   3 1.25 1.25 28.6 -0.69 -0.36 15.8 87 1 5 2 2 1 0 1  0HD 501 D 4 1.13 2.73 29.6 -0.33 -0.09 19.6 79 2 4 0 7 1 0 0  0HD 501 D 5 1.10 1.40 33.4 -0.27 -0.20 11.6 74 1 2 1 5 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.