PDBsum entry 3v8o

Tunnel analysis for: 3v8o calculated with

MOLE 2.0

PDB id

3v8o

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.43

1.49

21.3

-1.78

-0.41

17.1

71

2

1

2

1

2

0

0

2

1.41

1.65

21.6

-1.36

-0.53

22.9

74

2

4

0

2

2

0

0

3

1.34

1.84

22.8

-1.78

-0.26

17.3

75

2

2

2

2

2

1

0

4

1.21

1.74

23.1

-2.36

-0.43

21.1

74

2

3

2

1

2

1

0

5

1.61

1.77

29.6

-2.89

-0.51

29.2

71

5

3

2

1

2

1

0

6

1.61

1.77

33.7

-2.14

-0.43

24.0

73

4

3

2

4

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.